STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU37478.1PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: vap:Vapar_2634 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding. (335 aa)    
Predicted Functional Partners:
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
  
 0.969
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
   
 0.913
ADU35250.1
PFAM: Phosphoglycerate mutase; KEGG: vap:Vapar_0972 phosphoglycerate mutase.
  
 
 0.904
ADU37479.1
PFAM: major facilitator superfamily MFS_1; KEGG: vap:Vapar_2633 major facilitator superfamily MFS_1.
   
 
 0.640
ADU40145.1
PFAM: Barstar (barnase inhibitor); KEGG: vap:Vapar_5272 barstar (barnase inhibitor).
  
     0.620
ADU37477.1
KEGG: vap:Vapar_2635 hypothetical protein.
       0.535
ADU34715.1
KEGG: vap:Vapar_0474 protein of unknown function DUF132.
  
     0.437
ADU37176.1
KEGG: vap:Vapar_2035 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding.
  
 
 0.437
ADU39982.1
PFAM: branched-chain amino acid transport; KEGG: vap:Vapar_5109 branched-chain amino acid transport.
 
     0.436
ADU36813.1
TIGRFAM: sulfate adenylyltransferase, large subunit; KEGG: vap:Vapar_2404 sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein.
   
  
 0.419
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.