STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU37550.1PFAM: LrgB family protein; KEGG: vap:Vapar_2558 LrgB family protein. (242 aa)    
Predicted Functional Partners:
ADU37551.1
PFAM: LrgA family protein; KEGG: vap:Vapar_2557 LrgA family protein.
 
  
 0.994
ADU37552.1
PFAM: aminotransferase class I and II; KEGG: vap:Vapar_2556 aminotransferase class I and II.
       0.779
cobD-2
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.779
ADU37554.1
Cobaltochelatase; KEGG: azo:azo2630 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase.
  
    0.744
ADU37558.1
cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
       0.736
ADU37562.1
Adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.
       0.723
ADU37555.1
PFAM: Protein of unknown function DUF2149; KEGG: dia:Dtpsy_2683 hypothetical protein.
       0.716
ADU37556.1
KEGG: neu:NE0756 hypothetical protein.
       0.716
ADU37557.1
KEGG: vap:Vapar_2554 cob(II)yrinic acid a,c-diamide reductase; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase.
       0.716
ADU37559.1
KEGG: vap:Vapar_2552 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.694
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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