STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU37715.1TIGRFAM: protein TolA; KEGG: vap:Vapar_3117 protein TolA. (306 aa)    
Predicted Functional Partners:
ADU37714.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: vap:Vapar_3116 biopolymer transport protein ExbD/TolR.
  
 
 0.949
tolQ
Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.904
ADU37712.1
PFAM: thioesterase superfamily protein; KEGG: vap:Vapar_3114 thioesterase superfamily protein.
  
  
 0.803
ADU34868.1
Hypothetical protein; KEGG: vap:Vapar_0592 putative proline rich signal peptide protein.
  
     0.708
ADU40027.1
KEGG: vap:Vapar_5159 hypothetical protein.
  
     0.702
ADU34986.1
KEGG: vap:Vapar_0749 hypothetical protein.
  
     0.682
lptA
Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
    0.680
ADU35889.1
KEGG: vap:Vapar_1539 hypothetical protein.
  
     0.676
ADU34659.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: vap:Vapar_0410 biopolymer transport protein ExbD/TolR.
  
 
 0.661
ADU36263.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: vap:Vapar_1805 biopolymer transport protein ExbD/TolR.
  
 
 0.661
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.