STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU37719.1PFAM: protein of unknown function DUF388, OB-fold; KEGG: cti:RALTA_B0202 hypothetical protein. (130 aa)    
Predicted Functional Partners:
ADU39313.1
SMART: Tetratricopeptide repeat; KEGG: vap:Vapar_4450 tetratricopeptide domain protein.
  
    0.541
ADU37720.1
DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: vap:Vapar_3118 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type.
       0.539
ADU38983.1
PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: vap:Vapar_4210 protein of unknown function DUF21.
  
  
 0.503
ADU39781.1
Peptidoglycan-binding lysin domain; KEGG: vap:Vapar_4948 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; transport-associated; SMART: Peptidoglycan-binding LysM.
  
  
 0.456
ADU36341.1
PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2125 hypothetical protein.
  
     0.450
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.414
ADU37000.1
KEGG: vap:Vapar_2713 transcriptional regulator, XRE family; PFAM: Peptidase S24/S26A/S26B, conserved region; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.413
ADU38634.1
PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: vap:Vapar_3855 protein of unknown function DUF21.
   
  
 0.412
ADU39936.1
KEGG: vap:Vapar_2844 outer membrane autotransporter barrel domain protein; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; peptidase S8 and S53 subtilisin kexin sedolisin; Pertactin.
  
    0.406
macB
ABC transporter related protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
     0.401
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.