STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadAFAD dependent oxidoreductase; Oxidative deamination of D-amino acids. (419 aa)    
Predicted Functional Partners:
ADU36504.1
KEGG: vap:Vapar_3320 4-hydroxyphenylpyruvate dioxygenase; PFAM: Xylose isomerase domain-containing protein TIM barrel; Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 
 0.908
ADU39578.1
TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: vap:Vapar_4766 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 
 0.905
ADU37936.1
Aspartate transaminase; KEGG: vap:Vapar_2139 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II.
     
 0.903
ADU34548.1
PFAM: aminotransferase class I and II; KEGG: vap:Vapar_0312 aminotransferase class I and II.
    
 0.902
ADU35018.1
PFAM: Malate/L-lactate dehydrogenase; KEGG: vap:Vapar_0782 hypothetical protein; Belongs to the LDH2/MDH2 oxidoreductase family.
    
 0.902
thiG
Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
  
 0.761
hisC
KEGG: cti:RALTA_A0774 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.654
hisC-2
KEGG: vap:Vapar_1167 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.654
hisC-3
KEGG: vap:Vapar_1479 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.654
ADU37552.1
PFAM: aminotransferase class I and II; KEGG: vap:Vapar_2556 aminotransferase class I and II.
   
 
 0.654
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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