STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU37936.1Aspartate transaminase; KEGG: vap:Vapar_2139 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II. (398 aa)    
Predicted Functional Partners:
ADU39580.1
TIGRFAM: phenylalanine-4-hydroxylase; KEGG: vap:Vapar_4768 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase-like.
  
 
 0.955
ADU35989.1
KEGG: vap:Vapar_1617 chorismate mutase; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein.
    
 0.953
ADU39578.1
TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: vap:Vapar_4766 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
 
 0.950
ADU36504.1
KEGG: vap:Vapar_3320 4-hydroxyphenylpyruvate dioxygenase; PFAM: Xylose isomerase domain-containing protein TIM barrel; Glyoxalase/bleomycin resistance protein/dioxygenase.
  
 
 0.946
ADU35988.1
KEGG: vap:Vapar_1616 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase.
    
 0.923
ADU34548.1
PFAM: aminotransferase class I and II; KEGG: vap:Vapar_0312 aminotransferase class I and II.
   
 0.920
ADU38541.1
KEGG: vap:Vapar_3785 hypothetical protein.
     
 0.916
ADU39671.1
PFAM: aminotransferase class IV; KEGG: vap:Vapar_4878 aminotransferase class IV.
     
 0.916
hisC
KEGG: cti:RALTA_A0774 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.915
hisC-2
KEGG: vap:Vapar_1167 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.915
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.