STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38244.1KEGG: lch:Lcho_3182 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (323 aa)    
Predicted Functional Partners:
ADU38245.1
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: vap:Vapar_3552 peptidase U62 modulator of DNA gyrase.
       0.579
ADU35409.1
PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1108 extracellular solute-binding protein family 1.
 
   
 0.472
ADU35413.1
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vap:Vapar_1112 mannitol dehydrogenase domain protein.
 
   
 0.467
ADU37873.1
KEGG: vap:Vapar_2202 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
     0.463
ADU38246.1
PFAM: protein of unknown function DUF615; KEGG: vap:Vapar_3553 protein of unknown function DUF615; Belongs to the UPF0307 family.
       0.410
ADU38247.1
KEGG: vap:Vapar_3554 molybdenum cofactor synthesis domain protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain.
       0.410
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.