STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38263.1PFAM: helix-turn-helix HxlR type; KEGG: dal:Dalk_3676 transcriptional regulator, HxlR family. (111 aa)    
Predicted Functional Partners:
ADU38264.1
PFAM: Carboxymuconolactone decarboxylase; KEGG: cai:Caci_7488 carboxymuconolactone decarboxylase.
 
    0.860
ADU37594.1
PFAM: NAD-dependent epimerase/dehydratase; KEGG: vap:Vapar_2523 NAD-dependent epimerase/dehydratase.
 
  
 0.487
ADU38260.1
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: rme:Rmet_5399 hypothetical protein.
       0.423
ADU38261.1
PFAM: protein of unknown function DUF305; KEGG: reu:Reut_B3796 hypothetical protein.
       0.423
ADU38262.1
KEGG: bpt:Bpet0463 hypothetical protein.
       0.423
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.