STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38306.1PFAM: alpha/beta hydrolase fold; KEGG: vap:Vapar_3591 hypothetical protein. (272 aa)    
Predicted Functional Partners:
ADU38305.1
PFAM: 20S proteasome A and B subunits; KEGG: vap:Vapar_3590 20S proteasome A and B subunits.
       0.830
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
   
   0.795
ADU39982.1
PFAM: branched-chain amino acid transport; KEGG: vap:Vapar_5109 branched-chain amino acid transport.
  
     0.691
ADU34586.1
PFAM: regulatory protein TetR; KEGG: vap:Vapar_0349 transcriptional regulator, TetR family.
  
     0.616
ADU39576.1
PFAM: GCN5-related N-acetyltransferase; KEGG: vap:Vapar_4764 GCN5-related N-acetyltransferase.
  
    0.584
ADU39599.1
KEGG: vap:Vapar_4785 hypothetical protein.
  
     0.555
ADU35054.1
PFAM: Protein of unknown function DUF2147; KEGG: vap:Vapar_0811 hypothetical protein.
  
     0.540
ADU39617.1
PFAM: regulatory protein TetR; KEGG: vap:Vapar_4798 transcriptional regulator, TetR family.
  
     0.529
ADU35837.1
KEGG: vap:Vapar_1471 hypothetical protein.
  
     0.509
ADU35482.1
KEGG: vap:Vapar_1178 putative transmembrane protein.
  
     0.508
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.