STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38348.1KEGG: bbt:BBta_3360 hypothetical protein. (466 aa)    
Predicted Functional Partners:
ADU38349.1
KEGG: bbt:BBta_3361 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.971
ADU38347.1
KEGG: bbt:BBta_3359 hypothetical protein.
 
    
0.836
ADU38346.1
KEGG: hba:Hbal_2175 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
     0.725
ADU38343.1
PFAM: acyltransferase 3; KEGG: vap:Vapar_3623 inner membrane protein.
  
     0.612
ADU35462.1
KEGG: vap:Vapar_1160 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.605
ADU36121.1
KEGG: vap:Vapar_1740 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.605
ADU36440.1
KEGG: vap:Vapar_3386 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.605
ADU37656.1
KEGG: reh:H16_A2085 ABC transporter ATPase; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 
 0.605
nodI
ABC transporter related protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
  
 
 0.605
ADU35673.1
KEGG: vap:Vapar_6088 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.602
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.