STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38390.1PFAM: protein of unknown function DUF323; KEGG: vap:Vapar_3660 protein of unknown function DUF323. (423 aa)    
Predicted Functional Partners:
ADU38389.1
Methyltransferase; Manually curated; TIGRFAM: methyltransferase; KEGG: vap:Vapar_3659 methyltransferase; PFAM: Protein of unknown function DUF2260.
  
 0.991
ADU38391.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vap:Vapar_3661 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.527
ADU38392.1
KEGG: smt:Smal_3414 hypothetical protein.
       0.498
ADU38288.1
PFAM: sulfatase; KEGG: vap:Vapar_3577 sulfatase.
  
   0.473
ADU38388.1
PFAM: protein of unknown function DUF427; KEGG: vap:Vapar_3657 protein of unknown function DUF427.
 
     0.458
ADU36116.1
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1735 substrate-binding region of ABC-type glycine betaine transport system.
 
     0.431
ADU38012.1
PFAM: protein of unknown function DUF427; KEGG: sme:SM_b21379 hypothetical protein.
 
     0.407
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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