STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38433.1KEGG: vap:Vapar_3690 2-dehydro-3-deoxygalactonokinase; PFAM: 2-keto-3-deoxy-galactonokinase. (305 aa)    
Predicted Functional Partners:
ADU38434.1
PFAM: KDPG and KHG aldolase; KEGG: vap:Vapar_3691 KDPG and KHG aldolase.
 
  
 0.996
ADU38432.1
KEGG: vap:Vapar_3689 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
 
   
 0.846
ADU38431.1
KEGG: vap:Vapar_3688 GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
 
  
 0.687
ADU38435.1
PFAM: class II aldolase/adducin family protein; KEGG: vap:Vapar_3692 hypothetical protein.
       0.629
ADU35328.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_1041 short-chain dehydrogenase/reductase SDR.
  
     0.560
ADU39537.1
KEGG: bmr:BMI_II934 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
 
   
 0.523
ADU39944.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_5073 short-chain dehydrogenase/reductase SDR.
  
     0.515
ADU35413.1
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vap:Vapar_1112 mannitol dehydrogenase domain protein.
  
     0.512
ADU35024.1
KEGG: vap:Vapar_0783 galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein.
  
   
 0.510
ADU35026.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: vei:Veis_1539 tripartite ATP-independent periplasmic transporter DctQ.
 
     0.441
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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