STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38536.1PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vap:Vapar_3773 YbaK/EbsC protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (167 aa)    
Predicted Functional Partners:
ADU38537.1
PFAM: aldo/keto reductase; KEGG: vap:Vapar_3774 aldo/keto reductase.
       0.802
ADU38534.1
PFAM: Endoribonuclease L-PSP; KEGG: vap:Vapar_3771 endoribonuclease L-PSP.
 
     0.685
plsY
Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.647
ADU38538.1
PFAM: alpha/beta hydrolase fold; KEGG: vap:Vapar_3775 alpha/beta hydrolase fold protein.
 
     0.638
ADU39359.1
KEGG: vap:Vapar_4490 transport-associated; PFAM: transport-associated; SMART: Transport-associated and nodulation region.
  
     0.459
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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