STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38577.1Acetaldehyde dehydrogenase (acetylating); KEGG: vap:Vapar_3831 succinate-semialdehyde dehydrogenase (NAD(P)(+)). (479 aa)    
Predicted Functional Partners:
ADU36350.1
KEGG: cti:RALTA_B0680 putative alcool deshydrogenase; TIGRFAM: phosphonate metabolism-associated iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase.
 
 0.955
ADU37297.1
PFAM: iron-containing alcohol dehydrogenase; KEGG: vap:Vapar_2864 iron-containing alcohol dehydrogenase.
 
 0.950
ADU39257.1
PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase.
 
 0.899
ADU38578.1
PFAM: AMP-dependent synthetase and ligase; KEGG: vap:Vapar_3832 AMP-dependent synthetase and ligase.
 
 0.865
ADU38579.1
PFAM: protein of unknown function DUF81; KEGG: vap:Vapar_3833 protein of unknown function DUF81.
 
     0.816
ADU38575.1
KEGG: vap:Vapar_3829 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
 
   
 0.739
ADU36562.1
KEGG: vap:Vapar_3276 ethanolamine ammonia-lyase; PFAM: Ethanolamine ammonia lyase large subunit.
 
 
 0.712
ADU38576.1
KEGG: vap:Vapar_3830 hypothetical protein.
       0.703
ADU38574.1
Cobaltochelatase; KEGG: vap:Vapar_3828 cobaltochelatase; PFAM: Cobalt chelatase CobT subunit.
 
     0.649
ADU36561.1
KEGG: vap:Vapar_3277 ethanolamine ammonia-lyase small subunit; PFAM: Ethanolamine ammonia-lyase light chain; Belongs to the EutC family.
  
 
 0.646
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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