STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38613.1KEGG: pzu:PHZ_c1190 hypothetical protein. (132 aa)    
Predicted Functional Partners:
ADU39838.1
PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: vap:Vapar_4989 alcohol dehydrogenase GroES domain protein.
  
     0.636
ADU39804.1
KEGG: vap:Vapar_4968 hypothetical protein.
  
     0.626
ADU38614.1
KEGG: vap:Vapar_3852 hypothetical protein.
       0.618
ADU39616.1
KEGG: vap:Vapar_4797 hypothetical protein.
  
     0.532
ADU39620.1
KEGG: vap:Vapar_4801 acyltransferase, WS/DGAT/MGAT; TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089.
  
     0.511
ADU38362.1
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: vap:Vapar_3638 antibiotic biosynthesis monooxygenase.
  
     0.502
ADU36734.1
PFAM: Uncharacterised conserved protein UCP07580; KEGG: vap:Vapar_2354 hypothetical protein.
  
     0.497
ADU38264.1
PFAM: Carboxymuconolactone decarboxylase; KEGG: cai:Caci_7488 carboxymuconolactone decarboxylase.
  
     0.461
ADU38615.1
KEGG: vap:Vapar_6319 tetratricopeptide TPR_4.
       0.453
ADU36879.1
KEGG: cti:RALTA_B2000 taurine dioxygenase, 2-oxoglutarate-dependent; PFAM: Taurine catabolism dioxygenase TauD/TfdA.
  
     0.433
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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