STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38626.1Hypothetical protein; Manually curated; KEGG: sen:SACE_5305 XRE family transcriptional regulator. (86 aa)    
Predicted Functional Partners:
ADU38625.1
PFAM: Excinuclease ABC C subunit domain protein; KEGG: vap:Vapar_1009 excinuclease ABC C subunit domain protein.
       0.572
ADU38624.1
KEGG: vap:Vapar_0467 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase.
       0.507
ADU38627.1
PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ara:Arad_1237 hypothetical protein.
       0.425
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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