STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38642.1PFAM: class II aldolase/adducin family protein; KEGG: vap:Vapar_3870 hypothetical protein. (274 aa)    
Predicted Functional Partners:
ADU38641.1
KEGG: vap:Vapar_3865 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: extracellular solute-binding protein family 3.
       0.705
ADU38643.1
KEGG: vap:Vapar_3871 alkanesulfonate monooxygenase; PFAM: Luciferase-like, subgroup.
 
     0.608
ADU38644.1
SMART: extracellular solute-binding protein family 3; KEGG: vap:Vapar_3872 extracellular solute-binding protein family 3.
 
     0.496
ADU38648.1
KEGG: vap:Vapar_3876 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
 
    0.490
ADU35789.1
PFAM: HpcH/HpaI aldolase; KEGG: vap:Vapar_1434 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
   
    0.481
ADU38041.1
PFAM: HpcH/HpaI aldolase; KEGG: vap:Vapar_2028 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
   
    0.481
ADU38668.1
Citryl-CoA lyase; KEGG: vap:Vapar_3898 citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
   
    0.481
ADU38647.1
PFAM: cysteine dioxygenase type I; KEGG: vap:Vapar_3875 cysteine dioxygenase type I.
 
     0.445
ADU38541.1
KEGG: vap:Vapar_3785 hypothetical protein.
  
  
 0.440
ADU36851.1
L-ribulokinase; KEGG: sli:Slin_1239 L-ribulokinase; TIGRFAM: L-ribulokinase; PFAM: Carbohydrate kinase, FGGY-like; Belongs to the ribulokinase family.
  
  
 0.423
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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