STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38665.1PFAM: amidohydrolase 2; KEGG: vap:Vapar_3895 amidohydrolase 2. (300 aa)    
Predicted Functional Partners:
ADU36780.1
PFAM: amidohydrolase 2; KEGG: vap:Vapar_5743 amidohydrolase 2.
 
   
 0.823
ADU36778.1
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; Extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: bur:Bcep18194_C7572 protocatechuate 4,5-dioxygenase.
 
   
 0.812
ADU36779.1
KEGG: vap:Vapar_5742 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase.
 
   
 0.801
ADU38666.1
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vap:Vapar_3896 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.778
ADU38667.1
KEGG: vap:Vapar_3897 hypothetical protein.
       0.674
ADU34466.1
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: dac:Daci_0103 extradiol ring-cleavage dioxygenase class III protein subunit B.
 
   
 0.616
ADU38668.1
Citryl-CoA lyase; KEGG: vap:Vapar_3898 citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.569
ADU36781.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_5744 transcriptional regulator, LysR family.
  
     0.504
ADU38669.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_3899 transcriptional regulator, LysR family.
 
     0.489
ADU35339.1
PFAM: dihydrodipicolinate synthetase; KEGG: vap:Vapar_1052 dihydrodipicolinate synthetase; Belongs to the DapA family.
 
  
 0.476
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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