STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38668.1Citryl-CoA lyase; KEGG: vap:Vapar_3898 citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (289 aa)    
Predicted Functional Partners:
ADU38041.1
PFAM: HpcH/HpaI aldolase; KEGG: vap:Vapar_2028 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.925
ADU35789.1
PFAM: HpcH/HpaI aldolase; KEGG: vap:Vapar_1434 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.921
ADU38666.1
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vap:Vapar_3896 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
  
 0.683
ADU38667.1
KEGG: vap:Vapar_3897 hypothetical protein.
       0.655
ADU38669.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_3899 transcriptional regulator, LysR family.
 
     0.614
ADU38665.1
PFAM: amidohydrolase 2; KEGG: vap:Vapar_3895 amidohydrolase 2.
       0.569
ADU35624.1
PFAM: MmgE/PrpD family protein; KEGG: vap:Vapar_1311 MmgE/PrpD family protein.
 
  
 0.553
ADU37948.1
TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: vap:Vapar_2127 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
 
  
 0.544
ADU35626.1
KEGG: vap:Vapar_1313 citrate synthase.
    
 0.537
ADU38043.1
KEGG: vap:Vapar_2026 hypothetical protein.
 
  
 0.537
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.