STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38679.1Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_3905 transcriptional regulator, LysR family. (329 aa)    
Predicted Functional Partners:
ADU38678.1
PFAM: Xanthine/uracil/vitamin C permease; KEGG: vap:Vapar_3904 xanthine/uracil/vitamin C permease.
       0.577
ADU38680.1
TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; KEGG: vap:Vapar_3906 xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead.
       0.536
ADU38681.1
KEGG: vap:Vapar_3907 xanthine dehydrogenase, small subunit; TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain-containing protein; ferredoxin; CO dehydrogenase flavoprotein domain protein.
       0.536
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.