STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38755.1PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: vap:Vapar_3964 aspartyl/asparaginyl beta-hydroxylase. (298 aa)    
Predicted Functional Partners:
ADU36550.1
Sulfatase; KEGG: vap:Vapar_3282 sulfatase; manually curated; PFAM: sulfatase; protein of unknown function DUF1705.
     
 0.906
ADU36974.1
PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sjp:SJA_C1-07060 P pilus assembly protein, porin PapC.
  
    0.521
ADU39719.1
PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bma:BMA1023 outer membrane usher protein.
  
    0.492
ADU39718.1
PFAM: Fimbrial protein domain-containing protein; KEGG: sml:Smlt0709 putative fimbria adhesin protein precursor.
  
    0.487
ADU36975.1
KEGG: sjp:SJA_C1-07050 P pilus assembly protein, chaperone PapD.
  
     0.479
ADU39720.1
PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: bpr:GBP346_A2159 fimbrial assembly chaperone protein.
  
     0.434
ADU38756.1
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: kfl:Kfla_1597 6-phosphogluconate dehydrogenase NAD-binding protein.
       0.433
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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