STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadA-2FAD dependent oxidoreductase; Oxidative deamination of D-amino acids. (433 aa)    
Predicted Functional Partners:
ADU36504.1
KEGG: vap:Vapar_3320 4-hydroxyphenylpyruvate dioxygenase; PFAM: Xylose isomerase domain-containing protein TIM barrel; Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 
 0.908
ADU39578.1
TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: vap:Vapar_4766 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 
 0.905
ADU37936.1
Aspartate transaminase; KEGG: vap:Vapar_2139 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II.
     
 0.903
ADU34548.1
PFAM: aminotransferase class I and II; KEGG: vap:Vapar_0312 aminotransferase class I and II.
    
 0.902
ADU35018.1
PFAM: Malate/L-lactate dehydrogenase; KEGG: vap:Vapar_0782 hypothetical protein; Belongs to the LDH2/MDH2 oxidoreductase family.
    
 0.902
hisC
KEGG: cti:RALTA_A0774 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.654
hisC-2
KEGG: vap:Vapar_1167 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.654
hisC-3
KEGG: vap:Vapar_1479 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.654
ADU37552.1
PFAM: aminotransferase class I and II; KEGG: vap:Vapar_2556 aminotransferase class I and II.
   
 
 0.654
ADU38759.1
KEGG: vap:Vapar_3966 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type.
  
    0.541
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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