STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38770.1PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpt:Rpal_5240 TonB-dependent receptor. (695 aa)    
Predicted Functional Partners:
ADU35050.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1191 putative transmembrane sensor.
 
  
 0.628
ADU34677.1
KEGG: vap:Vapar_0433 PepSY-associated TM helix domain protein.
 
   
 0.624
ADU38768.1
KEGG: mpt:Mpe_A1444 hypothetical protein.
 
     0.588
ADU39017.1
KEGG: vap:Vapar_4241 HupE/UreJ protein.
    
 0.549
ADU38771.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_3972 transcriptional regulator, LysR family.
       0.536
ADU35211.1
TIGRFAM: TonB family protein; KEGG: vap:Vapar_0936 TonB family protein.
  
 
 0.527
ADU36010.1
KEGG: vap:Vapar_1636 hypothetical protein.
  
 
 0.527
ADU36265.1
KEGG: vap:Vapar_1807 TonB family protein; TIGRFAM: TonB family protein; PFAM: TonB domain.
  
 
 0.527
ADU37715.1
TIGRFAM: protein TolA; KEGG: vap:Vapar_3117 protein TolA.
  
 
 0.527
ADU37735.1
TIGRFAM: TonB family protein; KEGG: caa:Caka_2267 TonB family protein.
  
 
 0.527
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.