STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38906.1PFAM: Patatin; KEGG: vap:Vapar_4076 patatin. (397 aa)    
Predicted Functional Partners:
ADU36640.1
KEGG: vap:Vapar_3206 hypothetical protein.
  
     0.553
ADU36641.1
KEGG: vap:Vapar_3205 hypothetical protein.
  
     0.468
ADU36419.1
KEGG: vap:Vapar_3404 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
     
 0.425
ADU39642.1
PFAM: cytochrome c class I; KEGG: vap:Vapar_4834 cytochrome c class I.
  
     0.418
ADU37300.1
KEGG: vap:Vapar_2872 hypothetical protein.
  
   
 0.415
ADU34421.1
KEGG: aav:Aave_4189 triacylglycerol lipase; PFAM: alpha/beta hydrolase fold.
 
   
 0.413
ADU35597.1
PFAM: fatty acid desaturase; KEGG: vap:Vapar_1280 fatty acid desaturase.
 
  
 0.410
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.