STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU38918.1KEGG: vap:Vapar_4090 hypothetical protein. (68 aa)    
Predicted Functional Partners:
ADU38919.1
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
    0.817
ADU35781.1
PFAM: protein of unknown function DUF339; KEGG: vap:Vapar_1426 protein of unknown function DUF339.
  
     0.761
ADU39210.1
KEGG: vap:Vapar_4388 hypothetical protein.
  
     0.748
ADU35889.1
KEGG: vap:Vapar_1539 hypothetical protein.
  
     0.746
ADU36150.1
KEGG: vap:Vapar_1766 phasin family protein; TIGRFAM: phasin family protein; PFAM: Phasin.
  
     0.743
ADU36697.1
KEGG: vap:Vapar_2319 putative inner membrane transmembrane protein.
  
     0.742
priB
Single-strand binding protein/Primosomal replication protein n; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.732
ADU40145.1
PFAM: Barstar (barnase inhibitor); KEGG: vap:Vapar_5272 barstar (barnase inhibitor).
  
     0.730
ADU37697.1
PFAM: Lytic transglycosylase catalytic; KEGG: vap:Vapar_3099 lytic transglycosylase catalytic.
  
    0.720
ADU37915.1
Multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; manually curated; KEGG: vap:Vapar_2161 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein.
  
     0.709
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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