STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU39036.1TIGRFAM: integral membrane protein, YccS/YhfK family; hypothetical protein; KEGG: vap:Vapar_5794 integral membrane protein, YccS/YhfK family. (736 aa)    
Predicted Functional Partners:
ADU37932.1
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.641
ADU39035.1
KEGG: vap:Vapar_4259 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.
  
    0.602
ADU39034.1
Integral membrane sensor signal transduction histidine kinase; KEGG: vap:Vapar_4258 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein.
       0.601
ADU36189.1
KEGG: mrd:Mrad2831_5739 ERF family protein; manually curated; PFAM: ERF family protein.
  
     0.561
ADU39037.1
KEGG: lif:LinJ29.0490 hypothetical protein.
       0.510
ADU35593.1
KEGG: vap:Vapar_1276 hypothetical protein.
  
     0.481
ADU39032.1
KEGG: vap:Vapar_4257 hypothetical protein.
       0.451
ADU39033.1
Hypothetical protein.
       0.451
ADU35904.1
KEGG: vei:Veis_4736 aspartate racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; Belongs to the aspartate/glutamate racemases family.
  
    0.422
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.