STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU39064.1PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dac:Daci_1790 short chain dehydrogenase. (263 aa)    
Predicted Functional Partners:
ADU39063.1
KEGG: dac:Daci_1791 putative dehydrogenase/oxygenase subunit (flavoprotein).
 
    0.893
ADU39062.1
PFAM: flavin reductase domain protein FMN-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aau:AAur_0247 putative monooxygenase component B.
 
 
 0.866
ADU35883.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_1515 short-chain dehydrogenase/reductase SDR.
 
    0.743
ADU39065.1
KEGG: dac:Daci_1789 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
     0.672
ADU39061.1
KEGG: dac:Daci_1793 carboxymethylenebutenolidase.
 
   0.648
ADU38237.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mpt:Mpe_A3806 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.626
ADU40164.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_5291 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.566
ADU37273.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pna:Pnap_3988 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.490
ADU38790.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: scl:sce1411 putative dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.478
ADU35550.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rlg:Rleg_0887 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.463
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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