STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU39087.1PFAM: protein of unknown function DUF192; KEGG: slo:Shew_0641 hypothetical protein. (113 aa)    
Predicted Functional Partners:
ADU39088.1
PFAM: Type II secretion system F domain; KEGG: slo:Shew_0642 type II secretion system protein.
 
     0.930
ADU39089.1
PFAM: Type II secretion system F domain; KEGG: bpy:Bphyt_6877 type II secretion system protein.
 
     0.928
ADU39090.1
KEGG: hna:Hneap_2309 FHA domain containing protein; PFAM: type II secretion system protein E; Forkhead-associated protein; SMART: Forkhead-associated protein.
 
     0.926
ADU39086.1
KEGG: bpy:Bphyt_6880 TadE family protein; manually curated; PFAM: TadE family protein.
 
     0.920
ADU39092.1
Flp pilus assembly protein CpaB; KEGG: vei:Veis_0245 SAF domain-containing protein; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein.
 
     0.892
ADU39091.1
PFAM: type II and III secretion system protein; KEGG: hna:Hneap_2310 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
     0.871
ADU39096.1
KEGG: hna:Hneap_2318 hypothetical protein.
 
     0.821
ADU39097.1
KEGG: swd:Swoo_0756 hypothetical protein.
 
     0.806
ADU34726.1
PFAM: Type II secretion system F domain; KEGG: slo:Shew_0642 type II secretion system protein.
 
     0.781
ADU34725.1
PFAM: Type II secretion system F domain; KEGG: bph:Bphy_4347 type II secretion system protein.
 
     0.776
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.