STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU39131.1KEGG: bac:BamMC406_4742 type III secretion protein SpaR/YscT/HrcT; TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein. (260 aa)    
Predicted Functional Partners:
ADU39142.1
KEGG: bvi:Bcep1808_5343 HrpO family type III secretion protein; TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3.
 
 
 0.996
ADU39145.1
Yop virulence translocation R; KEGG: cti:RALTA_B1264 type III secretion system protein; TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein.
 
 
 0.995
ADU39136.1
Type III secretion apparatus lipoprotein, YscJ/HrcJ family; KEGG: cti:RALTA_B1256 SctJ: non flagellar T3S system conserved transmembrane lipoprotein. YscJ/FliF family; TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein.
 
 
 0.993
ADU39143.1
Type III secretion protein, HrcV family; KEGG: cti:RALTA_B1262 SctV: non flagellar T3S system conserved transmembrane protein. FHIPEP (flagella/HR/invasion proteins export pore) family; TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein.
 
 
 0.984
ADU39134.1
TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; KEGG: cti:RALTA_B1254 SctL: non flagellar T3S system conserved protein.
 
  
 0.976
ADU39130.1
PFAM: type III secretion exporter; KEGG: cti:RALTA_B1250 SctU: non flagellar T3S system conserved inner membrane protein. FlhB/HrpN/YscU/spaS family.
 
 
 0.973
ADU39133.1
TIGRFAM: type III secretion apparatus H+-transporting two-sector ATPase; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: cti:RALTA_B1253 SctN: non flagellar T3S system conserved protein. ATPase alpha/beta chains family; SMART: AAA ATPase.
 
  
 0.973
ADU39141.1
Type III secretion outer membrane pore, YscC/HrcC family; KEGG: cti:RALTA_B1260 SctC: non flagellar T3S system conserved protein. GSP D family; TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein.
 
 
 0.927
ADU39144.1
Type III secretion system apparatus protein YscQ/HrcQ; KEGG: cti:RALTA_B1263 SctQ: non flagellar T3S system conserved protein. FliN/MopA/SpaO family; TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein.
 
  
 0.918
ADU35374.1
KEGG: vap:Vapar_1073 general secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein.
  
 
 0.827
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.