STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU39137.1KEGG: cti:RALTA_B1257 hypothetical protein. (136 aa)    
Predicted Functional Partners:
ADU39136.1
Type III secretion apparatus lipoprotein, YscJ/HrcJ family; KEGG: cti:RALTA_B1256 SctJ: non flagellar T3S system conserved transmembrane lipoprotein. YscJ/FliF family; TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein.
       0.773
ADU39132.1
HrpD protein; KEGG: cti:RALTA_B1252 HrpD protein.
       0.723
ADU39133.1
TIGRFAM: type III secretion apparatus H+-transporting two-sector ATPase; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: cti:RALTA_B1253 SctN: non flagellar T3S system conserved protein. ATPase alpha/beta chains family; SMART: AAA ATPase.
       0.723
ADU39134.1
TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; KEGG: cti:RALTA_B1254 SctL: non flagellar T3S system conserved protein.
       0.723
ADU39135.1
KEGG: cti:RALTA_B1255 SctK: non flagellar T3S system conserved protein.
       0.723
ADU39130.1
PFAM: type III secretion exporter; KEGG: cti:RALTA_B1250 SctU: non flagellar T3S system conserved inner membrane protein. FlhB/HrpN/YscU/spaS family.
       0.703
ADU39131.1
KEGG: bac:BamMC406_4742 type III secretion protein SpaR/YscT/HrcT; TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein.
       0.703
ADU39138.1
Hypothetical protein; KEGG: ace:Acel_1751 methyl-accepting chemotaxis sensory transducer.
       0.598
ADU39139.1
Hypothetical protein.
       0.532
ADU39140.1
PFAM: Forkhead-associated protein; KEGG: cti:RALTA_B1259 SctD: non flagellar T3S system transmembrane protein.
       0.532
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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