STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU39140.1PFAM: Forkhead-associated protein; KEGG: cti:RALTA_B1259 SctD: non flagellar T3S system transmembrane protein. (421 aa)    
Predicted Functional Partners:
ADU39143.1
Type III secretion protein, HrcV family; KEGG: cti:RALTA_B1262 SctV: non flagellar T3S system conserved transmembrane protein. FHIPEP (flagella/HR/invasion proteins export pore) family; TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein.
  
  
 0.902
ADU39142.1
KEGG: bvi:Bcep1808_5343 HrpO family type III secretion protein; TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3.
  
  
 0.895
ADU39141.1
Type III secretion outer membrane pore, YscC/HrcC family; KEGG: cti:RALTA_B1260 SctC: non flagellar T3S system conserved protein. GSP D family; TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein.
  
  
 0.885
ADU39136.1
Type III secretion apparatus lipoprotein, YscJ/HrcJ family; KEGG: cti:RALTA_B1256 SctJ: non flagellar T3S system conserved transmembrane lipoprotein. YscJ/FliF family; TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein.
  
  
 0.863
ADU39131.1
KEGG: bac:BamMC406_4742 type III secretion protein SpaR/YscT/HrcT; TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein.
  
  
 0.794
ADU39139.1
Hypothetical protein.
       0.773
ADU39144.1
Type III secretion system apparatus protein YscQ/HrcQ; KEGG: cti:RALTA_B1263 SctQ: non flagellar T3S system conserved protein. FliN/MopA/SpaO family; TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein.
  
 
 0.750
ADU39134.1
TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; KEGG: cti:RALTA_B1254 SctL: non flagellar T3S system conserved protein.
  
 
 0.743
ADU37903.1
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; KEGG: vap:Vapar_2171 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component.
    
 
 0.737
ADU39133.1
TIGRFAM: type III secretion apparatus H+-transporting two-sector ATPase; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: cti:RALTA_B1253 SctN: non flagellar T3S system conserved protein. ATPase alpha/beta chains family; SMART: AAA ATPase.
  
 
 0.730
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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