STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU39146.1Helix-turn-helix domain protein; KEGG: sal:Sala_0311 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (272 aa)    
Predicted Functional Partners:
ADU35963.1
KEGG: vap:Vapar_1591 hypothetical protein.
 
     0.693
ADU35802.1
KEGG: vap:Vapar_1439 hypothetical protein.
 
     0.595
ADU39831.1
KEGG: vap:Vapar_4984 hypothetical protein.
  
     0.503
ADU36631.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reh:H16_A0213 hypothetical protein.
  
     0.489
ADU37172.1
KEGG: fra:Francci3_0103 putative isomerase.
 
     0.474
ADU38785.1
KEGG: mpt:Mpe_A1005 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
    0.425
ADU35125.1
KEGG: rme:Rmet_1604 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
    0.417
ADU38277.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa43940 hypothetical protein.
  
    0.402
ADU38789.1
Transcriptional regulator, AraC family; KEGG: scl:sce1410 putative AraC-like transcription regulator; PFAM: helix-turn-helix- domain containing protein AraC type; protein of unknown function DUF861 cupin_3; SMART: Helix-turn-helix, AraC domain.
  
  
 0.401
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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