STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU39197.1KEGG: enc:ECL_02073 RtxD/HlyD/CyaD protein of type I secretion system; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein. (389 aa)    
Predicted Functional Partners:
ADU39198.1
TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: efe:EFER_0543 type I secretion membrane protein, ATP binding protein, protein export; SMART: AAA ATPase.
 
 0.987
ADU39199.1
Manually curated; TIGRFAM: type I secretion outer membrane protein, TolC family; KEGG: zmn:Za10_0965 type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein.
 
 0.970
ADU39320.1
KEGG: vap:Vapar_4457 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.856
ADU39196.1
KEGG: vap:Vapar_4257 hypothetical protein.
       0.773
macB
ABC transporter related protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.766
macB-2
ABC transporter related protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.766
ADU39200.1
PFAM: FG-GAP repeat protein; Hemolysin-type calcium-binding region; KEGG: pin:Ping_2848 hemagglutinin/hemolysin-related protein.
  
  
 0.626
ADU38467.1
KEGG: vap:Vapar_3723 type I secretion outer membrane protein, TolC family; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein.
 
 
 0.610
ADU39318.1
PFAM: outer membrane efflux protein; KEGG: vap:Vapar_4455 outer membrane efflux protein.
 
 
 0.558
ADU35130.1
KEGG: vap:Vapar_0870 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.
  
 
 0.480
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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