STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU39207.1KEGG: vap:Vapar_4385 putative transmembrane cytochrome oxidase. (280 aa)    
Predicted Functional Partners:
ADU39205.1
PFAM: cytochrome oxidase assembly; KEGG: vap:Vapar_4383 cytochrome oxidase assembly.
 
 
 0.986
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.967
ADU39206.1
KEGG: vap:Vapar_4384 hypothetical protein.
 
  
 0.964
ADU39211.1
PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: vap:Vapar_4389 cytochrome c oxidase assembly protein.
 
 
 0.916
ADU39214.1
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.906
ADU39203.1
PFAM: electron transport protein SCO1/SenC; KEGG: vap:Vapar_4381 electron transport protein SCO1/SenC.
 
  
 0.869
ADU39208.1
KEGG: vap:Vapar_4386 putative transmembrane protein.
 
     0.824
ADU39209.1
PFAM: cytochrome c oxidase subunit III; KEGG: vap:Vapar_4387 cytochrome-c oxidase.
 
  
 0.823
ADU37198.1
KEGG: vap:Vapar_1993 cytochrome c oxidase, subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II.
 
 
 0.744
ADU39213.1
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
 
 0.734
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.