STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU39659.1PFAM: inner-membrane translocator; KEGG: vap:Vapar_4865 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (345 aa)    
Predicted Functional Partners:
ADU39660.1
KEGG: vap:Vapar_4866 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.965
ADU39658.1
KEGG: vap:Vapar_4864 ABC sugar transporter, periplasmic ligand binding protein.
 
 
 0.931
ADU38009.1
KEGG: bph:Bphy_2242 ABC sugar transporter, periplasmic ligand binding protein.
 
 
 0.869
ADU34580.1
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vap:Vapar_0344 periplasmic binding protein/LacI transcriptional regulator.
 
 0.857
ADU36847.1
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: hse:Hsero_0727 sugar ABC transporter periplasmic protein.
 
 0.841
rbsA
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.833
ADU34613.1
KEGG: vap:Vapar_0372 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.829
rbsA-2
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.829
rbsA-3
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.829
ADU35335.1
KEGG: vap:Vapar_1048 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.825
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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