STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU39980.1KEGG: vap:Vapar_5107 beta-lactamase domain protein. (325 aa)    
Predicted Functional Partners:
ADU39978.1
PFAM: monooxygenase FAD-binding; KEGG: vap:Vapar_5105 monooxygenase FAD-binding.
 
  
 0.956
ADU39979.1
KEGG: vap:Vapar_5106 hypothetical protein.
 
     0.949
ADU39976.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vap:Vapar_5103 glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.850
ADU34523.1
PFAM: monooxygenase FAD-binding; KEGG: vap:Vapar_0291 FAD-dependent oxidoreductase.
 
  
 0.814
ADU39594.1
PFAM: monooxygenase FAD-binding; KEGG: vap:Vapar_4781 monooxygenase FAD-binding.
 
  
 0.813
ADU34522.1
KEGG: vap:Vapar_0290 hypothetical protein.
 
     0.793
ADU39977.1
KEGG: vap:Vapar_5104 hypothetical protein.
       0.783
ADU39981.1
KEGG: vap:Vapar_5108 hypothetical protein.
       0.647
ADU39975.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_5102 transcriptional regulator, LysR family.
  
    0.567
ADU38052.1
KEGG: vap:Vapar_2019 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain.
 
 
 
 0.498
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.