STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU40055.1KEGG: vap:Vapar_5182 hypothetical protein. (335 aa)    
Predicted Functional Partners:
ADU40056.1
TIGRFAM: type IV pilus modification protein PilV; KEGG: vap:Vapar_5183 type IV pilus modification protein PilV.
 
  
 0.964
ADU40053.1
KEGG: vap:Vapar_5180 fimbrial protein pilin.
 
  
 0.901
ADU40052.1
Manually curated; KEGG: vap:Vapar_5179 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein.
 
  
 0.899
ADU40054.1
KEGG: vap:Vapar_5181 hypothetical protein.
  
  
 0.891
ADU40057.1
KEGG: vap:Vapar_5184 hypothetical protein.
 
  
 0.865
ADU39075.1
KEGG: mpt:Mpe_A3405 fimbrial biogenesis protein.
  
  
 0.674
ADU39318.1
PFAM: outer membrane efflux protein; KEGG: vap:Vapar_4455 outer membrane efflux protein.
  
     0.626
ADU39251.1
KEGG: vap:Vapar_4461 hypothetical protein.
  
     0.610
ADU39591.1
KEGG: vap:Vapar_4778 hypothetical protein.
  
     0.599
ADU35795.1
KEGG: bvi:Bcep1808_3481 hypothetical protein.
 
     0.588
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.