Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KTF04564.1Hypothetical protein. (272 aa)    
Predicted Functional Partners:
KTF03531.1
Hypothetical protein.
  
    0.771
KTF04995.1
Hypothetical protein.
  
     0.739
KTF04852.1
Hypothetical protein.
  
     0.733
KTF04873.1
Hypothetical protein.
  
     0.732
KTF03732.1
FtsX-like permease family protein.
  
    0.725
KTF04812.1
Hypothetical protein.
  
     0.716
KTF04276.1
Hypothetical protein.
  
     0.708
KTF04632.1
Hypothetical protein.
  
     0.707
KTF03762.1
Bacterial regulatory protein, tetR family.
  
     0.692
KTF04519.1
Hypothetical protein.
  
     0.689
Your Current Organism:
Trueperella bernardiae
NCBI taxonomy Id: 59561
Other names: ATCC 51727, Actinomyces bernardiae, Arcanibacterium bernardiae, Arcanobacterium bernardiae, CCUG 33419, CDC coryneform group 2, CIP 104252, DSM 9152, LCDC 89-0504, LMG 18721, LMG:18721, T. bernardiae
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