Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KTF04600.1Hypothetical protein. (752 aa)    
Predicted Functional Partners:
KTF05095.1
Hypothetical protein.
 
     0.835
KTF05097.1
Hypothetical protein; Thiamine pyrophosphokinase C terminal.
 
     0.827
mctB
Copper transporter MctB precursor.
 
     0.820
KTF04994.1
Hypothetical protein.
  
     0.773
gpgS
Glucosyl-3-phosphoglycerate synthase.
 
     0.767
pheA
Prephenate dehydratase.
       0.691
murJ
Putative peptidoglycan biosynthesis protein MurJ.
 
     0.664
KTF04942.1
Hypothetical protein.
  
     0.612
mviN_1
Putative peptidoglycan biosynthesis protein MviN.
  
     0.584
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.566
Your Current Organism:
Trueperella bernardiae
NCBI taxonomy Id: 59561
Other names: ATCC 51727, Actinomyces bernardiae, Arcanibacterium bernardiae, Arcanobacterium bernardiae, CCUG 33419, CDC coryneform group 2, CIP 104252, DSM 9152, LCDC 89-0504, LMG 18721, LMG:18721, T. bernardiae
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