Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dctBC4-dicarboxylate transport sensor protein DctB. (689 aa)    
Predicted Functional Partners:
hupR1
Hydrogenase transcriptional regulatory protein hupR1.
 
 
 
 0.965
sdcS_2
Sodium-dependent dicarboxylate transporter SdcS.
 
     0.846
arlS
Signal transduction histidine-protein kinase ArlS.
 
 
 
 0.598
devS
Redox sensor histidine kinase response regulator DevS.
   
 
 0.503
tcrY
Putative sensor histidine kinase TcrY.
 
 
 
 0.483
tcrX
Putative transcriptional regulatory protein TcrX.
 
 
 0.471
phoP_1
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 
 0.469
phoP_2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 
 0.469
mtrA
DNA-binding response regulator MtrA.
 
 
 0.448
regX3
Sensory transduction protein regX3.
 
 
 0.403
Your Current Organism:
Trueperella bernardiae
NCBI taxonomy Id: 59561
Other names: ATCC 51727, Actinomyces bernardiae, Arcanibacterium bernardiae, Arcanobacterium bernardiae, CCUG 33419, CDC coryneform group 2, CIP 104252, DSM 9152, LCDC 89-0504, LMG 18721, LMG:18721, T. bernardiae
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