Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
desK_2Sensor histidine kinase DesK. (395 aa)    
Predicted Functional Partners:
nreC_3
Oxygen regulatory protein NreC.
 
 0.965
nreC_2
Oxygen regulatory protein NreC.
 
 
 0.852
vraR
Response regulator protein VraR.
 
 
 0.850
nreC_1
Oxygen regulatory protein NreC.
 
 
 0.841
devR
Transcriptional regulatory protein DevR (DosR).
 
 
 0.818
ytrE
ABC transporter ATP-binding protein YtrE.
  
    0.784
KTF04423.1
Hypothetical protein.
       0.773
nreB
Oxygen sensor histidine kinase NreB.
  
     0.766
yedK
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
       0.622
whiB1
Transcriptional regulator WhiB1; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.541
Your Current Organism:
Trueperella bernardiae
NCBI taxonomy Id: 59561
Other names: ATCC 51727, Actinomyces bernardiae, Arcanibacterium bernardiae, Arcanobacterium bernardiae, CCUG 33419, CDC coryneform group 2, CIP 104252, DSM 9152, LCDC 89-0504, LMG 18721, LMG:18721, T. bernardiae
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