Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KTF03910.1HIT-like protein. (142 aa)    
Predicted Functional Partners:
cobB
NAD-dependent protein deacetylase.
  
 
  0.707
leuS
Leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.689
glnA_1
Putative glutamine synthetase 2.
  
   0.666
glnA_2
Glutamine synthetase 1.
  
   0.666
udk_1
Uridine kinase.
   
  0.609
udk_2
Uridine kinase.
   
  0.609
lysX_2
Lysylphosphatidylglycerol biosynthesis bifunctional protein LysX; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
 
 0.594
KTF03909.1
FG-GAP repeat protein.
       0.568
pksC
Polyketide biosynthesis malonyl CoA-acyl carrier protein transacylase PksC.
  
   0.543
lysX_1
Lysylphosphatidylglycerol biosynthesis bifunctional protein LysX; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
  0.503
Your Current Organism:
Trueperella bernardiae
NCBI taxonomy Id: 59561
Other names: ATCC 51727, Actinomyces bernardiae, Arcanibacterium bernardiae, Arcanobacterium bernardiae, CCUG 33419, CDC coryneform group 2, CIP 104252, DSM 9152, LCDC 89-0504, LMG 18721, LMG:18721, T. bernardiae
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