Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
tnpR_2Transposon Tn3 resolvase. (416 aa)    
Predicted Functional Partners:
tnpR_1
Transposon Tn3 resolvase.
 
    
0.807
KTF04687.1
Phage antirepressor protein KilAC domain protein.
 
   
 0.516
KTF04689.1
Hypothetical protein.
 
    0.497
yhdJ_2
DNA adenine methyltransferase YhdJ.
 
  
 0.475
yhdJ_1
DNA adenine methyltransferase YhdJ; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.472
KTF04688.1
Hypothetical protein.
  
     0.468
KTF04700.1
Hypothetical protein.
  
     0.445
KTF03398.1
Hypothetical protein.
 
     0.443
KTF04674.1
Ski2-like helicase.
  
     0.425
KTF03387.1
Hypothetical protein.
 
    0.425
Your Current Organism:
Trueperella bernardiae
NCBI taxonomy Id: 59561
Other names: ATCC 51727, Actinomyces bernardiae, Arcanibacterium bernardiae, Arcanobacterium bernardiae, CCUG 33419, CDC coryneform group 2, CIP 104252, DSM 9152, LCDC 89-0504, LMG 18721, LMG:18721, T. bernardiae
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