Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dhaAFHaloalkane dehalogenase. (210 aa)    
Predicted Functional Partners:
KTF03470.1
Hypothetical protein.
       0.779
KTF05070.1
Procyclic acidic repetitive protein (PARP).
  
     0.769
KTF04848.1
4Fe-4S dicluster domain protein.
  
     0.755
KTF03597.1
Bacterial regulatory protein, tetR family.
  
     0.752
exo
Beta-hexosaminidase.
  
     0.743
KTF04241.1
Hypothetical protein.
  
     0.734
mshD_2
Mycothiol acetyltransferase.
  
     0.709
KTF03901.1
Hypothetical protein.
  
     0.693
mshA
D-inositol-3-phosphate glycosyltransferase.
  
     0.692
aroK
Shikimate kinase.
  
     0.651
Your Current Organism:
Trueperella bernardiae
NCBI taxonomy Id: 59561
Other names: ATCC 51727, Actinomyces bernardiae, Arcanibacterium bernardiae, Arcanobacterium bernardiae, CCUG 33419, CDC coryneform group 2, CIP 104252, DSM 9152, LCDC 89-0504, LMG 18721, LMG:18721, T. bernardiae
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