Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
pflB_2Formate acetyltransferase. (82 aa)    
Predicted Functional Partners:
pflB_1
Formate acetyltransferase 1.
     0.994
pflA
Pyruvate formate-lyase 1-activating enzyme.
 
  
 0.966
ilvE
Branched-chain-amino-acid aminotransferase.
       0.412
leuA_2
2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.412
Your Current Organism:
Trueperella bernardiae
NCBI taxonomy Id: 59561
Other names: ATCC 51727, Actinomyces bernardiae, Arcanibacterium bernardiae, Arcanobacterium bernardiae, CCUG 33419, CDC coryneform group 2, CIP 104252, DSM 9152, LCDC 89-0504, LMG 18721, LMG:18721, T. bernardiae
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