STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTF03416.1Hypothetical protein. (218 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease adapter protein ClpS; Belongs to the ClpS family.
 
  
 0.900
rbn
Ribonuclease BN.
 
     0.874
racE
Glutamate racemase 1; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.856
glnR
HTH-type transcriptional regulator GlnR.
  
    0.796
lpqB
Lipoprotein LpqB precursor.
  
     0.691
KTF04340.1
Hypothetical protein.
  
     0.671
pncB1
Nicotinate phosphoribosyltransferase pncB1; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
       0.671
KTF04519.1
Hypothetical protein.
  
     0.638
KTF03802.1
Phosphotransferase enzyme family protein.
  
     0.633
KTF03475.1
Hypothetical protein.
  
     0.629
Your Current Organism:
Trueperella bernardiae
NCBI taxonomy Id: 59561
Other names: ATCC 51727, Actinomyces bernardiae, Arcanibacterium bernardiae, Arcanobacterium bernardiae, CCUG 33419, CDC coryneform group 2, CIP 104252, DSM 9152, LCDC 89-0504, LMG 18721, LMG:18721, T. bernardiae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.