Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KTF03368.1Hypothetical protein. (230 aa)    
Predicted Functional Partners:
KTF03367.1
Peptidase; Gp58-like protein.
 
   0.973
smc_3
Chromosome partition protein Smc.
 
    0.964
KTF03366.1
Hypothetical protein.
 
     0.922
KTF03634.1
Hypothetical protein; Cpl-7 lysozyme C-terminal domain.
 
     0.799
KTF04681.1
Hypothetical protein.
  
     0.731
ydiP
Putative BsuMI modification methylase subunit YdiP; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
    0.730
KTF04675.1
Hypothetical protein.
  
     0.723
ecfT
Energy-coupling factor transporter transmembrane protein EcfT.
  
     0.690
cna_1
Collagen adhesin precursor.
 
 
   0.684
KTF03374.1
Phage head-tail joining protein.
 
    0.674
Your Current Organism:
Trueperella bernardiae
NCBI taxonomy Id: 59561
Other names: ATCC 51727, Actinomyces bernardiae, Arcanibacterium bernardiae, Arcanobacterium bernardiae, CCUG 33419, CDC coryneform group 2, CIP 104252, DSM 9152, LCDC 89-0504, LMG 18721, LMG:18721, T. bernardiae
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