Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
macB_2Macrolide export ATP-binding/permease protein MacB. (424 aa)    
Predicted Functional Partners:
KTF03358.1
Hypothetical protein.
 
    0.952
tpd
34 kDa membrane antigen precursor.
 
     0.883
efeU
Ferrous iron permease EfeU precursor.
 
     0.855
yknZ
Putative ABC transporter permease YknZ.
 
    
0.843
KTF04174.1
FtsX-like permease family protein.
  
     0.772
lolD_3
Lipoprotein-releasing system ATP-binding protein LolD.
 
   0.715
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
   0.597
KTF04645.1
Putative ABC transporter ATP-binding protein.
 
   0.577
lolD_2
Lipoprotein-releasing system ATP-binding protein LolD.
 
   0.537
bceA
Bacitracin export ATP-binding protein BceA.
 
   0.532
Your Current Organism:
Trueperella bernardiae
NCBI taxonomy Id: 59561
Other names: ATCC 51727, Actinomyces bernardiae, Arcanibacterium bernardiae, Arcanobacterium bernardiae, CCUG 33419, CDC coryneform group 2, CIP 104252, DSM 9152, LCDC 89-0504, LMG 18721, LMG:18721, T. bernardiae
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