STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL52545.1PFAM: sulfatase; KEGG: met:M446_6751 sulfatase. (545 aa)    
Predicted Functional Partners:
EFL49303.1
PFAM: protein of unknown function DUF323; KEGG: sfu:Sfum_1144 hypothetical protein.
 
   0.942
EFL52641.1
PFAM: Radical SAM domain protein; KEGG: dma:DMR_03240 hypothetical protein.
  
 
 0.897
EFL52544.1
KEGG: app:CAP2UW1_0198 nonspecific acid phosphatase precursor.
 
     0.894
EFL52541.1
Doubled CXXCH domain protein; KEGG: ppw:PputW619_1988 TPR repeat-containing protein; PFAM: doubled CXXCH domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide repeat.
 
     0.852
EFL49454.1
PFAM: glycosyl transferase family 2; glycoside hydrolase family 2 TIM barrel; KEGG: dma:DMR_13080 putative glycosyltransferase.
  
 0.823
EFL52539.1
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: bbt:BBta_0604 hypothetical protein.
 
     0.777
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.772
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.760
EFL52534.1
KEGG: dma:DMR_07990 hypothetical protein.
 
   
 0.742
EFL52903.1
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.737
Your Current Organism:
Desulfovibrio fructosivorans
NCBI taxonomy Id: 596151
Other names: D. fructosivorans JJ, Desulfovibrio fructosivorans ATCC 49200, Desulfovibrio fructosivorans DSM 3604, Desulfovibrio fructosivorans JJ, Desulfovibrio fructosivorans str. JJ, Desulfovibrio fructosivorans strain JJ, Desulfovibrio fructosovorans JJ
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