STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL51877.1PFAM: Rhomboid family protein; KEGG: dma:DMR_19850 hypothetical membrane protein. (336 aa)    
Predicted Functional Partners:
EFL52759.1
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: dma:DMR_43330 putative N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin.
 
   0.863
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.837
tatA-2
Twin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.837
tatA-3
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.837
EFL53212.1
Cell wall hydrolase/autolysin; KEGG: dma:DMR_21740 N-acetylmuramoyl-L-alanine amidase family protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
  
   0.820
EFL49730.1
Cell wall hydrolase/autolysin; KEGG: dma:DMR_17540 N-acetylmuramoyl-L-alanine amidase family protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
  
   0.820
EFL49377.1
HflK protein; HflC and HflK could encode or regulate a protease.
  
 0.817
EFL49376.1
HflC protein; HflC and HflK could regulate a protease.
  
 0.816
EFL51715.1
Band 7 protein; KEGG: dma:DMR_00100 hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein.
   
 0.807
EFL51947.1
KEGG: dma:DMR_25740 cell division protein FtsH.
     
 0.698
Your Current Organism:
Desulfovibrio fructosivorans
NCBI taxonomy Id: 596151
Other names: D. fructosivorans JJ, Desulfovibrio fructosivorans ATCC 49200, Desulfovibrio fructosivorans DSM 3604, Desulfovibrio fructosivorans JJ, Desulfovibrio fructosivorans str. JJ, Desulfovibrio fructosivorans strain JJ, Desulfovibrio fructosovorans JJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.